STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE96243.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
AHE96242.1
Glucosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.801
AHE95477.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
AHE96244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
AHE96245.1
Pilus assembly protein PilY; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
AHE96873.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.514
AHE96874.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.514
AHE96875.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.514
AHE96246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.514
AHE96096.1
Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.481
AHE95982.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.433
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.