STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE96369.1Fimbrial assembly protein PilC2; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
AHE95517.1
General secretion pathway protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.964
AHE96048.1
Pilus biosynthesis protein TapB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.964
AHE96366.1
General secretion pathway protein G; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.923
AHE96368.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.897
AHE95959.1
Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.841
AHE95817.1
Twitching motility protein pilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.791
AHE95391.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
AHE96367.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.776
AHE95502.1
Twitching motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.699
AHE95520.1
General secretion pathway protein K; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.639
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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