AHE96896.1 protein (Thermocrinis ruber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AHE96896.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (109 aa)

Predicted Functional Partners:

AHE96897.1

0.686

AHE96390.1

0.545

AHE96387.1

0.504

AHE96388.1

0.504

AHE96389.1

0.504

Your Current Organism:

Thermocrinis ruber

NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHE96387.1	AHE96388.1	THERU_06595	THERU_06600	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE96387.1	AHE96389.1	THERU_06595	THERU_06605	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE96387.1	AHE96390.1	THERU_06595	THERU_06610	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AHE96387.1	AHE96896.1	THERU_06595	THERU_06615	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504
AHE96387.1	AHE96897.1	THERU_06595	THERU_06620	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.453
AHE96388.1	AHE96387.1	THERU_06600	THERU_06595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	0.773
AHE96388.1	AHE96389.1	THERU_06600	THERU_06605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE96388.1	AHE96390.1	THERU_06600	THERU_06610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AHE96388.1	AHE96896.1	THERU_06600	THERU_06615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504
AHE96388.1	AHE96897.1	THERU_06600	THERU_06620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.453
AHE96389.1	AHE96387.1	THERU_06605	THERU_06595	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	0.773
AHE96389.1	AHE96388.1	THERU_06605	THERU_06600	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AHE96389.1	AHE96390.1	THERU_06605	THERU_06610	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AHE96389.1	AHE96896.1	THERU_06605	THERU_06615	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.504
AHE96389.1	AHE96897.1	THERU_06605	THERU_06620	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.453
AHE96390.1	AHE96387.1	THERU_06610	THERU_06595	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5,10-methylenetetrahydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methylenetetrahydrofolate reductase family.	0.724
AHE96390.1	AHE96388.1	THERU_06610	THERU_06600	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AHE96390.1	AHE96389.1	THERU_06610	THERU_06605	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GYD family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
AHE96390.1	AHE96896.1	THERU_06610	THERU_06615	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.545
AHE96390.1	AHE96897.1	THERU_06610	THERU_06620	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.489