STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE96456.1Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)    
Predicted Functional Partners:
AHE96457.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.816
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.634
AHE95521.1
Abortive infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.633
tadA
Adenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.581
AHE96474.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.571
AHE96145.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.568
AHE96458.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
AHE96459.1
Activase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
AHE96905.1
Activase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.568
AHE95412.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.