Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHE95648.1 | AHE95852.1 | THERU_02050 | THERU_03220 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.545 |
| AHE95648.1 | AHE96219.1 | THERU_02050 | THERU_05600 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.702 |
| AHE95648.1 | AHE96475.1 | THERU_02050 | THERU_07095 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.995 |
| AHE95648.1 | AHE96728.1 | THERU_02050 | THERU_00240 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.912 |
| AHE95648.1 | recA | THERU_02050 | THERU_00565 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.966 |
| AHE95648.1 | sbcD | THERU_02050 | THERU_00235 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent dsDNA exonuclease subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.985 |
| AHE95648.1 | topA | THERU_02050 | THERU_07425 | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.799 |
| AHE95852.1 | AHE95648.1 | THERU_03220 | THERU_02050 | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.545 |
| AHE95852.1 | AHE96475.1 | THERU_03220 | THERU_07095 | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.614 |
| AHE95852.1 | AHE96612.1 | THERU_03220 | THERU_07875 | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.641 |
| AHE95852.1 | recA | THERU_03220 | THERU_00565 | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.545 |
| AHE95852.1 | topA | THERU_03220 | THERU_07425 | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.843 |
| AHE96219.1 | AHE95648.1 | THERU_05600 | THERU_02050 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.702 |
| AHE96219.1 | AHE96475.1 | THERU_05600 | THERU_07095 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.963 |
| AHE96219.1 | AHE96533.1 | THERU_05600 | THERU_07435 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. | 0.406 |
| AHE96219.1 | AHE96728.1 | THERU_05600 | THERU_00240 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.454 |
| AHE96219.1 | recA | THERU_05600 | THERU_00565 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.953 |
| AHE96219.1 | sbcD | THERU_05600 | THERU_00235 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent dsDNA exonuclease subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.536 |
| AHE96219.1 | topA | THERU_05600 | THERU_07425 | ATP-dependent DNA helicase Rep; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.770 |
| AHE96475.1 | AHE95648.1 | THERU_07095 | THERU_02050 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.995 |
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