STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBtRNA-splicing ligase RtcB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RtcB family. (480 aa)    
Predicted Functional Partners:
AHE95673.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.950
AHE96568.1
Molybdenum cofactor biosynthesis protein MoaC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.791
AHE95591.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.735
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.572
AHE96567.1
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.540
AHE95616.1
DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.481
AHE95893.1
Phage-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.424
AHE96390.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.423
Your Current Organism:
Thermocrinis ruber
NCBI taxonomy Id: 75906
Other names: DSM 23557, T. ruber, strain OC 1/4, strain OC 14/7/2
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