Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AHE95359.1 | AHE96631.1 | THERU_00365 | THERU_07970 | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.823 |
| AHE95359.1 | rpoA | THERU_00365 | THERU_01535 | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.910 |
| AHE95359.1 | rpoB | THERU_00365 | THERU_07300 | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.926 |
| AHE95359.1 | rpoC | THERU_00365 | THERU_07305 | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.903 |
| AHE95359.1 | rpoZ | THERU_00365 | THERU_01155 | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.903 |
| AHE96631.1 | AHE95359.1 | THERU_07970 | THERU_00365 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.823 |
| AHE96631.1 | AHE96632.1 | THERU_07970 | THERU_07975 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.825 |
| AHE96631.1 | AHE96633.1 | THERU_07970 | THERU_07980 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Biofilm PGA synthesis protein PgaA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.767 |
| AHE96631.1 | AHE96634.1 | THERU_07970 | THERU_07985 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Biofilm PGA synthesis protein PgaA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.786 |
| AHE96631.1 | dnaG | THERU_07970 | THERU_07610 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.941 |
| AHE96631.1 | rpoA | THERU_07970 | THERU_01535 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.951 |
| AHE96631.1 | rpoB | THERU_07970 | THERU_07300 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.962 |
| AHE96631.1 | rpoC | THERU_07970 | THERU_07305 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.947 |
| AHE96631.1 | rpoZ | THERU_07970 | THERU_01155 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.930 |
| AHE96631.1 | truB | THERU_07970 | THERU_07965 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.786 |
| AHE96632.1 | AHE96631.1 | THERU_07975 | THERU_07970 | Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.825 |
| AHE96632.1 | AHE96633.1 | THERU_07975 | THERU_07980 | Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Biofilm PGA synthesis protein PgaA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.793 |
| AHE96632.1 | AHE96634.1 | THERU_07975 | THERU_07985 | Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Biofilm PGA synthesis protein PgaA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.890 |
| AHE96632.1 | truB | THERU_07975 | THERU_07965 | Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.815 |
| AHE96633.1 | AHE96631.1 | THERU_07980 | THERU_07970 | Biofilm PGA synthesis protein PgaA; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.767 |
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