A0A0K0EV89 protein (Strongyloides venezuelensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0EV89

HTH La-type RNA-binding domain-containing protein. (401 aa)

Predicted Functional Partners:

A0A0K0F116

0.685

A0A0K0F617

0.657

A0A0K0F584

0.624

A0A0K0EZE4

0.616

A0A0K0FIG5

0.515

A0A0K0FM12

0.505

A0A0K0FM90

0.502

A0A0K0F8Q5

0.494

A0A0K0EWG4

0.491

A0A0K0G0C5

0.491

Your Current Organism:

Strongyloides venezuelensis

NCBI taxonomy Id: 75913
Other names: S. venezuelensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0EV89	A0A0K0EWG4	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein.	0.491
A0A0K0EV89	A0A0K0EZE4	HTH La-type RNA-binding domain-containing protein.	Putative H/ACA ribonucleoprotein complex subunit 4 (inferred by orthology to a C. elegans protein).	0.616
A0A0K0EV89	A0A0K0F116	HTH La-type RNA-binding domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.685
A0A0K0EV89	A0A0K0F584	HTH La-type RNA-binding domain-containing protein.	ATP-dependent RNA helicase DHX8 (inferred by orthology to a human protein).	0.624
A0A0K0EV89	A0A0K0F617	HTH La-type RNA-binding domain-containing protein.	MIF4G domain-containing protein.	0.657
A0A0K0EV89	A0A0K0F8Q5	HTH La-type RNA-binding domain-containing protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.494
A0A0K0EV89	A0A0K0FIG5	HTH La-type RNA-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.515
A0A0K0EV89	A0A0K0FM12	HTH La-type RNA-binding domain-containing protein.	TruB_N domain-containing protein.	0.505
A0A0K0EV89	A0A0K0FM90	HTH La-type RNA-binding domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.502
A0A0K0EV89	A0A0K0G0C5	HTH La-type RNA-binding domain-containing protein.	RRM domain-containing protein.	0.491
A0A0K0EWG4	A0A0K0EV89	Uncharacterized protein.	HTH La-type RNA-binding domain-containing protein.	0.491
A0A0K0EWG4	A0A0K0EZE4	Uncharacterized protein.	Putative H/ACA ribonucleoprotein complex subunit 4 (inferred by orthology to a C. elegans protein).	0.633
A0A0K0EWG4	A0A0K0F584	Uncharacterized protein.	ATP-dependent RNA helicase DHX8 (inferred by orthology to a human protein).	0.426
A0A0K0EWG4	A0A0K0F617	Uncharacterized protein.	MIF4G domain-containing protein.	0.977
A0A0K0EWG4	A0A0K0F8Q5	Uncharacterized protein.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.810
A0A0K0EWG4	A0A0K0FIG5	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.577
A0A0K0EWG4	A0A0K0FM12	Uncharacterized protein.	TruB_N domain-containing protein.	0.456
A0A0K0EWG4	A0A0K0FM90	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.	0.953
A0A0K0EZE4	A0A0K0EV89	Putative H/ACA ribonucleoprotein complex subunit 4 (inferred by orthology to a C. elegans protein).	HTH La-type RNA-binding domain-containing protein.	0.616
A0A0K0EZE4	A0A0K0EWG4	Putative H/ACA ribonucleoprotein complex subunit 4 (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.633