A0A0K0EVE6 protein (Strongyloides venezuelensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0EVE6

Uncharacterized protein. (884 aa)

Predicted Functional Partners:

A0A0K0FXI2

0.961

A0A0K0FUU5

0.959

A0A0K0FN42

0.958

A0A0K0FAD7

0.957

A0A0K0G3M0

0.948

A0A0K0EZ90

0.936

A0A0K0FYW3

0.935

A0A0K0F1Y8

0.927

A0A0K0F1D6

0.926

A0A0K0FYB3

0.923

Your Current Organism:

Strongyloides venezuelensis

NCBI taxonomy Id: 75913
Other names: S. venezuelensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0EVE6	A0A0K0EZ90	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.936
A0A0K0EVE6	A0A0K0F1D6	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.926
A0A0K0EVE6	A0A0K0F1Y8	Uncharacterized protein.	TFIID_20kDa domain-containing protein.	0.927
A0A0K0EVE6	A0A0K0FAD7	Uncharacterized protein.	Myb-like domain-containing protein.	0.957
A0A0K0EVE6	A0A0K0FN42	Uncharacterized protein.	Transformation/transcription domain-associated protein (inferred by orthology to a human protein).	0.958
A0A0K0EVE6	A0A0K0FUU5	Uncharacterized protein.	Histone acetyltransferase KAT2B (inferred by orthology to a human protein).	0.959
A0A0K0EVE6	A0A0K0FXI2	Uncharacterized protein.	Uncharacterized protein.	0.961
A0A0K0EVE6	A0A0K0FYB3	Uncharacterized protein.	Uncharacterized protein.	0.923
A0A0K0EVE6	A0A0K0FYW3	Uncharacterized protein.	Uncharacterized protein.	0.935
A0A0K0EVE6	A0A0K0G3M0	Uncharacterized protein.	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	0.948
A0A0K0EZ90	A0A0K0EVE6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.936
A0A0K0EZ90	A0A0K0F1D6	WD_REPEATS_REGION domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
A0A0K0EZ90	A0A0K0F1Y8	WD_REPEATS_REGION domain-containing protein.	TFIID_20kDa domain-containing protein.	0.998
A0A0K0EZ90	A0A0K0FAD7	WD_REPEATS_REGION domain-containing protein.	Myb-like domain-containing protein.	0.984
A0A0K0EZ90	A0A0K0FN42	WD_REPEATS_REGION domain-containing protein.	Transformation/transcription domain-associated protein (inferred by orthology to a human protein).	0.996
A0A0K0EZ90	A0A0K0FUU5	WD_REPEATS_REGION domain-containing protein.	Histone acetyltransferase KAT2B (inferred by orthology to a human protein).	0.987
A0A0K0EZ90	A0A0K0FXI2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A0K0EZ90	A0A0K0FYB3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.925
A0A0K0EZ90	A0A0K0FYW3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.977
A0A0K0EZ90	A0A0K0G3M0	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-40S ribosomal protein S27a (inferred by orthology to a human protein).	0.905