A0A0K0FVF4 protein (Strongyloides venezuelensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0FVF4

1-alkyl-2-acetylglycerophosphocholine esterase. (434 aa)

Predicted Functional Partners:

A0A0K0F6H8

0.839

A0A0K0EWT4

0.805

A0A0K0EXR4

0.798

A0A0K0F5Z2

0.776

A0A0K0F792

0.776

A0A0K0EUZ5

0.768

A0A0K0FP14

0.768

A0A0K0FBV7

0.763

A0A0K0EV68

0.744

A0A0K0F8Z9

0.744

Your Current Organism:

Strongyloides venezuelensis

NCBI taxonomy Id: 75913
Other names: S. venezuelensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0EUZ5	A0A0K0EV68	LRAT domain-containing protein.	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.694
A0A0K0EUZ5	A0A0K0EWT4	LRAT domain-containing protein.	Phospholipase A(2).	0.741
A0A0K0EUZ5	A0A0K0EXR4	LRAT domain-containing protein.	Lipase_GDSL domain-containing protein.	0.744
A0A0K0EUZ5	A0A0K0F8Z9	LRAT domain-containing protein.	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.694
A0A0K0EUZ5	A0A0K0FBV7	LRAT domain-containing protein.	85/88 kDa calcium-independent phospholipase A2 (inferred by orthology to a human protein).	0.564
A0A0K0EUZ5	A0A0K0FVF4	LRAT domain-containing protein.	1-alkyl-2-acetylglycerophosphocholine esterase.	0.768
A0A0K0EV68	A0A0K0EUZ5	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	LRAT domain-containing protein.	0.694
A0A0K0EV68	A0A0K0EWT4	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Phospholipase A(2).	0.744
A0A0K0EV68	A0A0K0EXR4	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Lipase_GDSL domain-containing protein.	0.746
A0A0K0EV68	A0A0K0F5Z2	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	SMP-LTD domain-containing protein.	0.601
A0A0K0EV68	A0A0K0F792	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Uncharacterized protein.	0.601
A0A0K0EV68	A0A0K0FP14	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	Trehalose-phosphatase (projected from Caenorhabditis elegans ortholog gob-1).	0.694
A0A0K0EV68	A0A0K0FVF4	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	1-alkyl-2-acetylglycerophosphocholine esterase.	0.744
A0A0K0EWT4	A0A0K0EUZ5	Phospholipase A(2).	LRAT domain-containing protein.	0.741
A0A0K0EWT4	A0A0K0EV68	Phospholipase A(2).	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.744
A0A0K0EWT4	A0A0K0EXR4	Phospholipase A(2).	Lipase_GDSL domain-containing protein.	0.852
A0A0K0EWT4	A0A0K0F5Z2	Phospholipase A(2).	SMP-LTD domain-containing protein.	0.768
A0A0K0EWT4	A0A0K0F792	Phospholipase A(2).	Uncharacterized protein.	0.768
A0A0K0EWT4	A0A0K0F8Z9	Phospholipase A(2).	Bb in a boxcar (inferred by orthology to a D. melanogaster protein); Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.744
A0A0K0EWT4	A0A0K0FBV7	Phospholipase A(2).	85/88 kDa calcium-independent phospholipase A2 (inferred by orthology to a human protein).	0.786