A0A0K0FYG7 protein (Strongyloides venezuelensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0FYG7

Uncharacterized protein. (1440 aa)

Predicted Functional Partners:

A0A0K0FB48

0.988

A0A0K0FKJ1

0.983

A0A0K0G1R2

0.891

A0A0K0EZN5

0.874

A0A0K0FAM9

0.778

A0A0K0F971

0.734

A0A0K0F5S8

0.729

A0A0K0G3U4

0.711

A0A0K0F5P2

0.702

A0A0K0FDX3

0.702

Your Current Organism:

Strongyloides venezuelensis

NCBI taxonomy Id: 75913
Other names: S. venezuelensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0EZN5	A0A0K0F5P2	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	0.853
A0A0K0EZN5	A0A0K0F5S8	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.967
A0A0K0EZN5	A0A0K0F971	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.992
A0A0K0EZN5	A0A0K0FAM9	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.989
A0A0K0EZN5	A0A0K0FB48	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	General transcription factor 3C polypeptide 5 (inferred by orthology to a human protein).	0.953
A0A0K0EZN5	A0A0K0FDX3	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	TFIIS N-terminal domain-containing protein.	0.844
A0A0K0EZN5	A0A0K0FKJ1	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	General transcription factor 3C polypeptide 3 (inferred by orthology to a human protein).	0.994
A0A0K0EZN5	A0A0K0FYG7	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	Uncharacterized protein.	0.874
A0A0K0EZN5	A0A0K0G1R2	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	Transcription factor TFIIIB component B'' homolog (inferred by orthology to a human protein).	0.996
A0A0K0EZN5	A0A0K0G3U4	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	Uncharacterized protein.	0.966
A0A0K0F5P2	A0A0K0EZN5	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	0.853
A0A0K0F5P2	A0A0K0F5S8	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.622
A0A0K0F5P2	A0A0K0F971	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.966
A0A0K0F5P2	A0A0K0FAM9	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.861
A0A0K0F5P2	A0A0K0FB48	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	General transcription factor 3C polypeptide 5 (inferred by orthology to a human protein).	0.710
A0A0K0F5P2	A0A0K0FKJ1	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	General transcription factor 3C polypeptide 3 (inferred by orthology to a human protein).	0.712
A0A0K0F5P2	A0A0K0FYG7	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.702
A0A0K0F5P2	A0A0K0G1R2	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	Transcription factor TFIIIB component B'' homolog (inferred by orthology to a human protein).	0.793
A0A0K0F5P2	A0A0K0G3U4	Putative transcription elongation factor S-II (inferred by orthology to a C. elegans protein).	Uncharacterized protein.	0.992
A0A0K0F5S8	A0A0K0EZN5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription factor IIIB 90 kDa subunit (inferred by orthology to a human protein).	0.967