A0A0K0G0B3 protein (Strongyloides venezuelensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0K0G0B3

FH2 domain-containing protein. (866 aa)

Predicted Functional Partners:

A0A0K0EYT4

0.834

A0A0K0F604

0.787

A0A0K0FW95

0.787

A0A0K0FWD5

0.787

A0A0K0FWQ8

0.787

A0A0K0FX44

0.787

A0A0K0FX48

0.787

A0A0K0FX70

0.787

A0A0K0F213

0.766

A0A0K0FXF2

0.763

Your Current Organism:

Strongyloides venezuelensis

NCBI taxonomy Id: 75913
Other names: S. venezuelensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0K0EYT4	A0A0K0G0B3	Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.	FH2 domain-containing protein.	0.834
A0A0K0F213	A0A0K0FXF2	Aspartate aminotransferase.	Aspartate aminotransferase.	0.971
A0A0K0F213	A0A0K0G0B3	Aspartate aminotransferase.	FH2 domain-containing protein.	0.766
A0A0K0F604	A0A0K0FW95	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Uncharacterized protein.	0.923
A0A0K0F604	A0A0K0FWD5	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	0.927
A0A0K0F604	A0A0K0FX44	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Unc-89 (inferred by orthology to a D. melanogaster protein).	0.764
A0A0K0F604	A0A0K0FX48	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Hemicentin-1 (inferred by orthology to a human protein).	0.488
A0A0K0F604	A0A0K0FX70	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Unc-89 (inferred by orthology to a D. melanogaster protein).	0.417
A0A0K0F604	A0A0K0G0B3	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	FH2 domain-containing protein.	0.787
A0A0K0FW95	A0A0K0F604	Uncharacterized protein.	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	0.923
A0A0K0FW95	A0A0K0FWD5	Uncharacterized protein.	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	0.448
A0A0K0FW95	A0A0K0FX48	Uncharacterized protein.	Hemicentin-1 (inferred by orthology to a human protein).	0.435
A0A0K0FW95	A0A0K0G0B3	Uncharacterized protein.	FH2 domain-containing protein.	0.787
A0A0K0FWD5	A0A0K0F604	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	0.927
A0A0K0FWD5	A0A0K0FW95	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Uncharacterized protein.	0.448
A0A0K0FWD5	A0A0K0FWQ8	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Hemicentin-1 (inferred by orthology to a human protein).	0.568
A0A0K0FWD5	A0A0K0FX44	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Unc-89 (inferred by orthology to a D. melanogaster protein).	0.783
A0A0K0FWD5	A0A0K0FX48	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Hemicentin-1 (inferred by orthology to a human protein).	0.697
A0A0K0FWD5	A0A0K0FX70	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	Unc-89 (inferred by orthology to a D. melanogaster protein).	0.571
A0A0K0FWD5	A0A0K0G0B3	Striated muscle preferentially expressed protein kinase (inferred by orthology to a human protein).	FH2 domain-containing protein.	0.787