STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORB67993.1Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)    
Predicted Functional Partners:
ORB67652.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
ORB67649.1
Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
ORB67992.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.973
ORB67994.1
Polyprenyl synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family.
 
 
 0.955
ORB67648.1
2Fe-2S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.939
ORB67650.1
Ubiquinone biosynthesis methyltransferase UbiE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.930
ORB67651.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
ORB66873.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.732
idi
Isopentenyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
 
  
 0.719
ORB67511.1
Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.693
Your Current Organism:
Mycolicibacterium tusciae
NCBI taxonomy Id: 75922
Other names: CCUG 50996, CIP 106367, DSM 44338, JCM 12692, M. tusciae, Mycobacterium sp. FI-25796, Mycobacterium tusciae, strain FI-25796
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