Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BST47_14050 | ORB65219.1 | BST47_14050 | BST47_14060 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.418 |
BST47_14050 | ORB65294.1 | BST47_14050 | BST47_14055 | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.880 |
ORB63957.1 | ORB65219.1 | BST47_18220 | BST47_14060 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |
ORB65219.1 | BST47_14050 | BST47_14060 | BST47_14050 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.418 |
ORB65219.1 | ORB63957.1 | BST47_14060 | BST47_18220 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |
ORB65219.1 | ORB65220.1 | BST47_14060 | BST47_14065 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.419 |
ORB65219.1 | ORB65221.1 | BST47_14060 | BST47_14070 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.416 |
ORB65219.1 | ORB65294.1 | BST47_14060 | BST47_14055 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.560 |
ORB65219.1 | ORB67022.1 | BST47_14060 | BST47_08150 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |
ORB65220.1 | ORB65219.1 | BST47_14065 | BST47_14060 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.419 |
ORB65220.1 | ORB65221.1 | BST47_14065 | BST47_14070 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.741 |
ORB65221.1 | ORB65219.1 | BST47_14070 | BST47_14060 | DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.416 |
ORB65221.1 | ORB65220.1 | BST47_14070 | BST47_14065 | DUF305 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.741 |
ORB65294.1 | BST47_14050 | BST47_14055 | BST47_14050 | Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.880 |
ORB65294.1 | ORB65219.1 | BST47_14055 | BST47_14060 | Heavy metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.560 |
ORB67022.1 | ORB65219.1 | BST47_08150 | BST47_14060 | RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is a general stress response regulator; expressed in stationary phase and under nitrogen depletion and cold shock; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.537 |