ORB63451.1 protein (Mycolicibacterium tusciae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ORB63451.1

ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (845 aa)

Predicted Functional Partners:

ORB63510.1

0.997

ORB63452.1

0.553

ORB63952.1

0.416

ORB61240.1

0.414

ORB61219.1

0.412

Your Current Organism:

Mycolicibacterium tusciae

NCBI taxonomy Id: 75922
Other names: CCUG 50996, CIP 106367, DSM 44338, JCM 12692, M. tusciae, Mycobacterium sp. FI-25796, Mycobacterium tusciae, strain FI-25796

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ORB61219.1	ORB61240.1	BST47_28695	BST47_28690	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORB61219.1	ORB63451.1	BST47_28695	BST47_20130	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ORB61219.1	ORB63510.1	BST47_28695	BST47_20135	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
ORB61240.1	ORB61219.1	BST47_28690	BST47_28695	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ORB61240.1	ORB63451.1	BST47_28690	BST47_20130	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
ORB61240.1	ORB63510.1	BST47_28690	BST47_20135	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ORB63451.1	ORB61219.1	BST47_20130	BST47_28695	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ORB63451.1	ORB61240.1	BST47_20130	BST47_28690	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
ORB63451.1	ORB63452.1	BST47_20130	BST47_20140	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ORB63451.1	ORB63510.1	BST47_20130	BST47_20135	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ORB63451.1	ORB63952.1	BST47_20130	BST47_18170	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ORB63452.1	ORB63451.1	BST47_20140	BST47_20130	HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ORB63452.1	ORB63510.1	BST47_20140	BST47_20135	HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ORB63510.1	ORB61219.1	BST47_20135	BST47_28695	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
ORB63510.1	ORB61240.1	BST47_20135	BST47_28690	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
ORB63510.1	ORB63451.1	BST47_20135	BST47_20130	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ORB63510.1	ORB63452.1	BST47_20135	BST47_20140	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
ORB63510.1	ORB63952.1	BST47_20135	BST47_18170	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
ORB63952.1	ORB63451.1	BST47_18170	BST47_20130	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ORB63952.1	ORB63510.1	BST47_18170	BST47_20135	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About