STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CH063_11641Transcriptional activator. (382 aa)    
Predicted Functional Partners:
CH063_00955
Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.
    
 
 0.979
CH063_08280
Nuclear protein Ataxin-7.
    
 
 0.978
CH063_07116
Uncharacterized protein.
    
 
 0.965
CH063_07638
Forms a complex with the other RRN protein RRN6 and RRN11.
    
 
 0.965
CH063_09761
Uncharacterized protein.
    
 
 0.947
CH063_02457
Ribosomal protein L19.
    
 
 0.947
CH063_07720
Transcription initiation factor TFIID subunit 12.
    
 
 0.906
CH063_07605
Histone acetyltransferase subunit 3.
    
 
 0.904
CH063_10785
WD repeat domain-containing protein.
   
 
 0.903
CH063_11312
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 
 0.903
Your Current Organism:
Colletotrichum higginsianum
NCBI taxonomy Id: 759273
Other names: C. higginsianum IMI 349063, Colletotrichum higginsianum IMI 349063
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.