STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001312325_02278Unannotated protein. (90 aa)    
Predicted Functional Partners:
GCA_001312325_02279
Unannotated protein.
       0.773
GCA_001312325_02280
Unannotated protein.
     
 0.750
GCA_001312325_02282
Unannotated protein.
       0.730
GCA_001312325_02281
Unannotated protein.
       0.729
GCA_001312325_00147
Unannotated protein.
    
 0.622
GCA_001312325_06627
Unannotated protein.
  
 
 0.607
GCA_001312325_06625
Unannotated protein.
  
 
 0.598
GCA_001312325_01950
Unannotated protein.
  
 
 0.587
GCA_001312325_06634
Unannotated protein.
     
 0.531
GCA_001312325_00045
Unannotated protein.
   
 0.522
Your Current Organism:
Lysinibacillus pakistanensis
NCBI taxonomy Id: 759811
Other names: DSM 24784, JCM 18776, KCTC 13795, L. pakistanensis, Lysinibacillus pakistanensis Ahmed et al. 2014, Lysinibacillus sp. JCM 18776, Lysinibacillus sp. NCCP-54, strain NCCP-54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.