STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001312325_04404Unannotated protein. (124 aa)    
Predicted Functional Partners:
GCA_001312325_04403
Unannotated protein.
     0.988
GCA_001312325_02477
Unannotated protein.
 
 
 0.983
GCA_001312325_02475
Unannotated protein.
 
 
 0.915
GCA_001312325_00492
Unannotated protein.
 
 
 0.900
MurB
Unannotated protein.
 
 
 0.892
MurA
Unannotated protein.
 
 
 0.875
MurF
Unannotated protein.
 
 
 0.874
GCA_001312325_00599
Unannotated protein.
 
 
 0.873
GCA_001312325_03136
Unannotated protein.
 
 
 0.868
GCA_001312325_00044
Unannotated protein.
 
 
 0.867
Your Current Organism:
Lysinibacillus pakistanensis
NCBI taxonomy Id: 759811
Other names: DSM 24784, JCM 18776, KCTC 13795, L. pakistanensis, Lysinibacillus pakistanensis Ahmed et al. 2014, Lysinibacillus sp. JCM 18776, Lysinibacillus sp. NCCP-54, strain NCCP-54
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.