STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA10449.1Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)    
Predicted Functional Partners:
AKA10411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.755
AKA12554.1
Surface antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.736
AKA10259.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.719
AKA11403.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.675
kynB
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.634
lapB
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.608
AKA11850.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
AKA10886.1
Lsg locus protein 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
AKA11912.1
Heptosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
AKA10442.1
AcrR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.517
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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