STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dapHShikimate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)    
Predicted Functional Partners:
neuB
N-acetyl neuramic acid synthetase NeuB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.943
neuA
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.919
neuC
Polyhydroxyalkanoate synthesis repressor PhaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.888
AKA10884.1
Lsg locus protein 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.762
AKA10887.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.619
AKA10888.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.619
AKA10889.1
Amylovoran biosynthesis protein AmsE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.619
AKA10886.1
Lsg locus protein 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.603
lst_2
CMP-N-acetylneuraminate-beta-galactosamide- alpha-2, 3-sialyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
AKA10879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.