ompW protein (Mannheimia haemolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Mannheimia haemolytica

NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKA12102.1	hemN	WC39_10640	WC39_04955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.495
AKA12102.1	ompW	WC39_10640	WC39_04385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
clpB_3	ompW	WC39_04380	WC39_04385	Protein disaggregation chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
clpB_3	trxA	WC39_04380	WC39_04390	Protein disaggregation chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.	0.436
hemN	AKA12102.1	WC39_04955	WC39_10640	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
hemN	mauG	WC39_04955	WC39_12045	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
hemN	ompW	WC39_04955	WC39_04385	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
hemN_1	mauG	WC39_13245	WC39_12045	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
hemN_1	ompW	WC39_13245	WC39_04385	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
lolD	ompW	WC39_03140	WC39_04385	ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
mauG	hemN	WC39_12045	WC39_04955	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.415
mauG	hemN_1	WC39_12045	WC39_13245	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
mauG	ompW	WC39_12045	WC39_04385	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
ompW	AKA12102.1	WC39_04385	WC39_10640	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
ompW	clpB_3	WC39_04385	WC39_04380	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein disaggregation chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
ompW	hemN	WC39_04385	WC39_04955	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.711
ompW	hemN_1	WC39_04385	WC39_13245	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
ompW	lolD	WC39_04385	WC39_03140	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.430
ompW	mauG	WC39_04385	WC39_12045	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methylamine utilization protein MauG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
ompW	trxA	WC39_04385	WC39_04390	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family.	0.420

page 1 of 2

Server load: low (14%) [HD]

Share

Network

Neighborhood

Experiments

Co-occurrence

Textmining

Co-expression

Databases

Fusion

© STRING Consortium 2026

Credits

Access

Info

About