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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yafQ_2Toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)    
Predicted Functional Partners:
dinJ
Damage-inducible protein J; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
AKA10969.1
Translation repressor RelB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.890
AKA10970.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.580
AKA10967.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
AKA10966.1
Phage tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.517
AKA10971.1
Phage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
pemK
Pemk protein; Toxic component of a type II toxin-antitoxin (TA) system.
 
   
 0.408
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.