STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA11093.1CRISPR-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
AKA11095.1
CRISPR-associated protein Csd2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.988
AKA11094.1
CRISPR-associated protein Csd1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.981
AKA11096.1
CRISPR-associated protein Cas4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.935
AKA11099.1
CRISPR-associated protein Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.860
AKA11098.1
CRISPR-associated protein Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.854
AKA11089.1
CRISPR-associated protein Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
AKA11097.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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