Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKA11215.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
AKA11213.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AKA11214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AKA11216.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
AKA12436.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.484
AKA12161.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.479
AKA11217.1
Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
AKA11218.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
AKA12437.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.441
AKA11219.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
AKA11220.1
Adenine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.437
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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