Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
clpP1Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family. (653 aa)    
Predicted Functional Partners:
clpX
Clp protease ClpX; Binds and unfolds substrates as part of the ClpXP protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.975
AKA11231.1
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.947
AKA11229.1
DNA packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.946
AKA11233.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.907
clpB_3
Protein disaggregation chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.854
AKA11228.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.768
AKA11230.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
folA
Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.696
clpP
Clp protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.639
AKA11235.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.611
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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