Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKA11246.1Host specificity protein J; Derived by automated computational analysis using gene prediction method: Protein Homology. (2349 aa)    
Predicted Functional Partners:
AKA11245.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.973
AKA11243.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.939
AKA11244.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.929
AKA11109.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.908
AKA11241.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.903
AKA11106.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.901
AKA10963.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.886
AKA11104.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.886
AKA11105.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.884
ppiB
Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.781
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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