STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA11261.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa)    
Predicted Functional Partners:
narL_1
Nitrate/nitrite response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.987
yhaX
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ywnH
Sortase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.619
nreC
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.565
ompA_2
Plastocyanin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
AKA11263.1
Nucleoside-triphosphate diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
ybjQ
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
AKA11265.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
fnr
Transcriptional regulator; Global transcription factor that controls the expression of over 100 target genes in response to anoxia; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.438
AKA12181.1
Nitrite reductase; Membrane protein, may be involved in the transfer of electrons from quinones to c-type cytochromes; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.436
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.