STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ibpAFilamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology. (3214 aa)    
Predicted Functional Partners:
AKA12727.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.940
AKA11400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.778
neuA
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.513
ssa1_1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.487
AKA10590.1
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.481
nuc
Nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.479
AKA11401.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.443
ccmF
Filamentous hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.430
queA_2
S-adenosylmethionine tRNA ribosyltransferase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
       0.422
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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