STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA11465.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
lysM
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.919
AKA12476.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.864
AKA11299.1
Tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.739
AKA12131.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.739
AKA11293.1
Baseplate wedge subunit; gpW; W protein; structural capsid protein; bacteriophage P2-like virions include a head and a tail; the capsid contractile tail consists of a contractile outer sheath, a inner tube, and a baseplate; W protein is though to be part of the baseplate because it is similar to baseplate wedge subunit gp25 of T4-like phages, NP_049800; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.730
AKA12122.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.730
AKA11305.1
gpD; D protein; bacteriophage P2-like virions include a head and a tail; D protein contributes to tail formation; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.700
AKA12124.1
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.700
pepP
Proline aminopeptidase P II; Exopeptidase able to cleave the peptide bond of the last amino acid if linked to a proline residue; substrate can be as short as a dipeptide; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.509
argA
N-acetylglutamate synthase; Catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the acetyltransferase family. ArgA subfamily.
       0.496
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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