STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
parD1_2-2Antitoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)    
Predicted Functional Partners:
parE1
Plasmid stabilization protein ParE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RelE toxin family.
 
 
 0.938
nadR_1
Transcriptional regulator; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.852
AKA10641.1
Plasmid stabilization system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
AKA11005.1
Plasmid stabilization system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
AKA11291.1
Plasmid stabilization system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
AKA11833.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
AKA12655.1
Plasmid stabilization system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
pemK
Pemk protein; Toxic component of a type II toxin-antitoxin (TA) system.
   
 
 0.467
efeM
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.465
efeN
Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
       0.448
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.