Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
AKA11538.1Invasion protein expression up-regulator SirB; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)    
Predicted Functional Partners:
yjgA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0307 family.
       0.773
AKA11539.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
bsdB
Hypothetical protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.746
rluA_2
Pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.631
AKA11540.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
pmbA
Protein PmbA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
AKA12475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
AKA12477.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
AKA10185.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.493
dedA
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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