Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKA11704.1 | aroC_2 | WC39_08510 | WC39_08515 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.792 |
| AKA11704.1 | cmoA_1 | WC39_08510 | WC39_08490 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | tRNA methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.530 |
| AKA11704.1 | menE_3 | WC39_08510 | WC39_08505 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | O-succinylbenzoic acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.791 |
| AKA11704.1 | mepA | WC39_08510 | WC39_08520 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.720 |
| AKA11704.1 | seqA_1 | WC39_08510 | WC39_08500 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Negative modulator of initiation of replication; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.767 |
| AKA11704.1 | ybfF | WC39_08510 | WC39_08495 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.531 |
| AKA12609.1 | ybfF | WC39_13395 | WC39_08495 | Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.721 |
| acpP | menE_3 | WC39_02030 | WC39_08505 | Acyl carrier protein; Carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. | O-succinylbenzoic acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.766 |
| acpP | ybfF | WC39_02030 | WC39_08495 | Acyl carrier protein; Carries the fatty acid chain in fatty acid biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology. | acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.735 |
| apaH | ybfF | WC39_06430 | WC39_08495 | Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. | acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.720 |
| aroC_2 | AKA11704.1 | WC39_08515 | WC39_08510 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.792 |
| aroC_2 | cmoA_1 | WC39_08515 | WC39_08490 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | tRNA methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | 0.543 |
| aroC_2 | menE_3 | WC39_08515 | WC39_08505 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | O-succinylbenzoic acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.803 |
| aroC_2 | mepA | WC39_08515 | WC39_08520 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.752 |
| aroC_2 | seqA_1 | WC39_08515 | WC39_08500 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Negative modulator of initiation of replication; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.767 |
| aroC_2 | trpC_2 | WC39_08515 | WC39_08730 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Indole-3-glycerol phosphate synthase; Monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.636 |
| aroC_2 | ybfF | WC39_08515 | WC39_08495 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.562 |
| cmoA_1 | AKA11704.1 | WC39_08490 | WC39_08510 | tRNA methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.530 |
| cmoA_1 | aroC_2 | WC39_08490 | WC39_08515 | tRNA methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.543 |
| cmoA_1 | menE_3 | WC39_08490 | WC39_08505 | tRNA methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM). | O-succinylbenzoic acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.530 |
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