Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKA11831.1Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)    
Predicted Functional Partners:
AKA12485.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.668
AKA11829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.584
AKA11830.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.581
AKA11828.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.520
AKA12303.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.518
AKA11673.1
Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.516
noc
RepB plasmid partition; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.516
dnaA
Chromosomal replication initiation protein; Binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.469
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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