STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcA_2TorR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)    
Predicted Functional Partners:
arcB_3
Aerobic respiration control protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
cpxA_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.865
phoR_2
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.857
arcA_1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.721
fixL
Tetrathionate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.613
metJ
Transcriptional repressor protein MetJ; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis; Belongs to the MetJ family.
  
     0.541
yejL
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0352 family.
  
     0.530
fadR
Fatty acid metabolism regulator protein; Multifunctional regulator of fatty acid metabolism.
  
  
 0.529
nlpI
Lipoprotein NlpI-like protein; May be involved in cell division.
  
     0.514
aer
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.504
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.