Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hxuAHeme transporter CcmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (938 aa)    
Predicted Functional Partners:
hxuB_5
Heme transporter CcmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.970
nadR_1
Transcriptional regulator; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.611
ssa1_1
Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.586
hxuC_3
Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.566
neuA
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.483
AKA10590.1
Acylneuraminate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.478
AKA12141.1
Mu-like prophage FluMu protein gp28; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.428
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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