Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKA12474.1Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
AKA12472.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.958
AKA12473.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.956
AKA12471.1
Phage tail length tape measure protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
AKA12475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.914
AKA12476.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.904
AKA12467.1
Tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.900
AKA12477.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.893
AKA12464.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.872
AKA12461.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.864
AKA12462.1
Head protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.849
Your Current Organism:
Mannheimia haemolytica
NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB
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