Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKA12643.1 | AKA12644.1 | WC39_13575 | WC39_13580 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.682 |
| AKA12643.1 | sigM | WC39_13575 | WC39_13585 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.682 |
| AKA12643.1 | ydgJ | WC39_13575 | WC39_13570 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.523 |
| AKA12643.1 | yedY_2 | WC39_13575 | WC39_13590 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | TMAO/DMSO reductase; In Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.483 |
| AKA12643.1 | yedZ_2 | WC39_13575 | WC39_13595 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.483 |
| AKA12644.1 | AKA12643.1 | WC39_13580 | WC39_13575 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.682 |
| AKA12644.1 | sigM | WC39_13580 | WC39_13585 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.930 |
| AKA12644.1 | ydgJ | WC39_13580 | WC39_13570 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.467 |
| AKA12644.1 | yedY_2 | WC39_13580 | WC39_13590 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | TMAO/DMSO reductase; In Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.557 |
| AKA12644.1 | yedZ_2 | WC39_13580 | WC39_13595 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| sigM | AKA12643.1 | WC39_13585 | WC39_13575 | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.682 |
| sigM | AKA12644.1 | WC39_13585 | WC39_13580 | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.930 |
| sigM | ydgJ | WC39_13585 | WC39_13570 | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.467 |
| sigM | yedY_2 | WC39_13585 | WC39_13590 | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | TMAO/DMSO reductase; In Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.548 |
| sigM | yedZ_2 | WC39_13585 | WC39_13595 | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | Sulfite oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.542 |
| ydgJ | AKA12643.1 | WC39_13570 | WC39_13575 | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.523 |
| ydgJ | AKA12644.1 | WC39_13570 | WC39_13580 | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.467 |
| ydgJ | sigM | WC39_13570 | WC39_13585 | Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. | 0.467 |
| yedY_2 | AKA12643.1 | WC39_13590 | WC39_13575 | TMAO/DMSO reductase; In Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.483 |
| yedY_2 | AKA12644.1 | WC39_13590 | WC39_13580 | TMAO/DMSO reductase; In Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; requires inner membrane anchor protein YedZ; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.557 |
page 1 of 2