STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA97355.1Uncharacterized beta-barrel protein YwiB, DUF1934 family. (142 aa)    
Predicted Functional Partners:
argS
arginyl-tRNA synthetase.
  
    0.942
SKB03258.1
Hypothetical protein.
  
     0.752
SKA87651.1
Protein of unknown function.
  
     0.740
SKA94234.1
Hypothetical protein.
  
    0.733
SKA91632.1
Hypothetical protein.
  
     0.715
SKB01252.1
Tetratricopeptide repeat-containing protein.
  
     0.697
SKA87818.1
Protein of unknown function.
  
     0.681
SKA97264.1
Protein of unknown function.
  
     0.668
SKB01147.1
Oxygen-independent coproporphyrinogen-3 oxidase.
  
    0.657
SKB06819.1
Putative zincin peptidase.
  
     0.637
Your Current Organism:
Sporosarcina newyorkensis
NCBI taxonomy Id: 759851
Other names: CCUG 59649, DSM 23544, LMG 26022, LMG:26022, S. newyorkensis, Sporosarcina newyorkensis Wolfgang et al. 2012, Sporosarcina sp. 3418, Sporosarcina sp. 4331, Sporosarcina sp. 4469, Sporosarcina sp. 4974, Sporosarcina sp. 4984, Sporosarcina sp. 5353, Sporosarcina sp. 57, Sporosarcina sp. 5868, Sporosarcina sp. 6062, Sporosarcina sp. R-31323, strain 6062
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