STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA97541.1Hypothetical protein. (228 aa)    
Predicted Functional Partners:
SKA97546.1
Putative zinc-finger.
       0.800
SKA97550.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.773
Your Current Organism:
Sporosarcina newyorkensis
NCBI taxonomy Id: 759851
Other names: CCUG 59649, DSM 23544, LMG 26022, LMG:26022, S. newyorkensis, Sporosarcina newyorkensis Wolfgang et al. 2012, Sporosarcina sp. 3418, Sporosarcina sp. 4331, Sporosarcina sp. 4469, Sporosarcina sp. 4974, Sporosarcina sp. 4984, Sporosarcina sp. 5353, Sporosarcina sp. 57, Sporosarcina sp. 5868, Sporosarcina sp. 6062, Sporosarcina sp. R-31323, strain 6062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.