Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEC01462.1RmuC-domain protein; COGs: COG1322 conserved hypothetical protein; InterPro IPR003798; KEGG: bgl:bglu_1g09340 RmuC domain protein; PFAM: DNA recombination RmuC; SPTR: Putative uncharacterized protein; IMG reference gene:2503956497; PFAM: RmuC family. (447 aa)    
Predicted Functional Partners:
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
       0.587
AEC01969.1
UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: ssm:Spirs_2383 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase PcrA; IMG reference gene:2503957034; PFAM: UvrD/REP helicase.
    
 0.501
AEC01461.1
NLPA lipoprotein; COGs: COG1464 ABC-type metal ion transport system periplasmic component/surface antigen; InterPro IPR004872; KEGG: fsu:Fisuc_1037 NlpA lipoprotein; PFAM: NLPA lipoprotein; SPTR: NLPA lipoprotein; IMG reference gene:2503956496; PFAM: NLPA lipoprotein; TIGRFAM: lipoprotein, YaeC family; Belongs to the nlpA lipoprotein family.
       0.438
AEC01464.1
Regulator of chromosome condensation RCC1; COGs: COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing protein; InterPro IPR011110:IPR000408; KEGG: aeh:Mlg_2687 regulator of chromosome condensation, RCC1; PFAM: Regulator of chromosome condensation, RCC1; Two component regulator propeller; SPTR: Alpha-tubulin suppressor and related RCC1 domain-containing protein-like protein; IMG reference gene:2503956499; PFAM: Regulator of chromosome condensation (RCC1) repeat.
       0.422
Your Current Organism:
Sphaerochaeta coccoides
NCBI taxonomy Id: 760011
Other names: S. coccoides DSM 17374, Sphaerochaeta coccoides DSM 17374, Sphaerochaeta coccoides str. DSM 17374, Sphaerochaeta coccoides strain DSM 17374, Spirochaeta coccoides DSM 17374, Spirochaeta coccoides SPN1, Spirochaeta sp. SPN1
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