STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL68286.1Hypothetical protein. (417 aa)    
Predicted Functional Partners:
AFL69780.1
Putative RNA-binding protein, snRNP like protein; PFAM: Domain of unknown function (DUF814); Fibronectin-binding protein A N-terminus (FbpA).
  
  
 0.941
AFL68287.1
PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: uracil-DNA glycosylase, family 4.
       0.794
AFL68288.1
Leucine-rich repeat (LRR) protein.
       0.661
AFL68289.1
Hypothetical protein.
       0.661
AFL68290.1
PFAM: HMGL-like; TIGRFAM: homocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
    0.661
AFL68291.1
Nitrogenase cofactor biosynthesis protein NifB; PFAM: Radical SAM superfamily; Dinitrogenase iron-molybdenum cofactor; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
       0.656
AFL68292.1
PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal.
       0.461
Your Current Organism:
Sulfurospirillum barnesii
NCBI taxonomy Id: 760154
Other names: S. barnesii SES-3, Sulfurospirillum barnesii SES-3, Sulfurospirillum barnesii str. SES-3, Sulfurospirillum barnesii strain SES-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.