STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEE47916.1KEGG: dfe:Dfer_5466 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504769351. (217 aa)    
Predicted Functional Partners:
AEE47917.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cpi:Cpin_0328 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504769352; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
 
   0.839
AEE50994.1
KEGG: dfe:Dfer_0638 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772512.
  
     0.590
AEE51280.1
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: dfe:Dfer_1000 outer membrane efflux protein; PFAM: Outer membrane efflux protein; SPTR: Outer membrane efflux protein; IMG reference gene:2504772805; PFAM: Outer membrane efflux protein.
  
    0.557
AEE51225.1
KEGG: dfe:Dfer_1264 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772747.
 
     0.546
AEE51365.1
KEGG: phe:Phep_1195 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504772891.
  
     0.481
AEE47918.1
COGs: COG5337 Spore coat assembly protein; InterPro IPR014867; KEGG: gau:GAU_1784 hypothetical protein; PFAM: Spore coat protein CotH; SPTR: Putative uncharacterized protein; IMG reference gene:2504769353; PFAM: CotH protein.
       0.466
AEE51822.1
InterPro IPR004360; KEGG: cpi:Cpin_6286 glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: Glyoxalase/bleomycin resistance protein/dioxygenase; IMG reference gene:2504773359; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
     0.452
AEE51164.1
COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR003593:IPR001140:IPR003439; KEGG: cpi:Cpin_4200 ABC transporter related; PFAM: ABC transporter-like; ABC transporter, transmembrane region; PRIAM: Xenobiotic-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter related; IMG reference gene:2504772685; PFAM: ABC transporter transmembrane region; ABC transporter.
  
    0.447
AEE51632.1
InterPro IPR011600; KEGG: peptidase C14 caspase catalytic subunit P20; PFAM: Peptidase C14, caspase catalytic; SPTR: Putative uncharacterized protein; IMG reference gene:2504773164; PFAM: Caspase domain.
  
     0.405
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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