Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
AEE48050.1RNA-directed DNA polymerase (Reverse transcriptase); COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597; KEGG: pth:PTH_2412 retron-type reverse transcriptase; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; SPTR: RNA-directed DNA polymerase (Reverse transcriptase); IMG reference gene:2504769489; PFAM: Group II intron, maturase-specific domain; Reverse transcriptase (RNA-dependent DNA polymerase). (465 aa)    
Predicted Functional Partners:
AEE48123.1
InterPro IPR003346; KEGG: rcu:RCOM_0102440 hypothetical protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Putative uncharacterized protein; IMG reference gene:2504769562; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.401
AEE49175.1
InterPro IPR003346; KEGG: rcu:RCOM_0102440 hypothetical protein; PFAM: Transposase, IS116/IS110/IS902; SPTR: Putative uncharacterized protein; IMG reference gene:2504770641; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.401
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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