Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEE48554.1Protein of unknown function DUF218; COGs: COG1434 conserved hypothetical protein; InterPro IPR003848; KEGG: dfe:Dfer_3103 protein of unknown function DUF218; PFAM: Protein of unknown function DUF218; SPTR: Putative uncharacterized protein; IMG reference gene:2504770002; PFAM: DUF218 domain. (251 aa)    
Predicted Functional Partners:
AEE48555.1
Rhomboid family protein; InterPro IPR002610; KEGG: cpi:Cpin_3769 rhomboid family protein; PFAM: Peptidase S54, rhomboid; SPTR: Rhomboid family protein; IMG reference gene:2504770003; PFAM: Rhomboid family.
 
     0.791
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.776
AEE48553.1
Hypothetical protein; IMG reference gene:2504770001.
       0.563
AEE50102.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: cpi:Cpin_0796 radical SAM domain protein; PFAM: Radical SAM; SPTR: Radical SAM domain protein; IMG reference gene:2504771587; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
 
     0.422
AEE48557.1
KEGG: dfe:Dfer_4739 vanadium-dependent haloperoxidase family protein; SPTR: Vanadium-dependent haloperoxidase family protein; IMG reference gene:2504770005; PFAM: PAP2 superfamily.
       0.406
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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