Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEE48605.1COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR007492; KEGG: sli:Slin_5746 response regulator receiver protein; PFAM: LytTr DNA-binding region; SPTR: LytTr DNA-binding domain protein; IMG reference gene:2504770055; PFAM: LytTr DNA-binding domain. (290 aa)    
Predicted Functional Partners:
AEE48804.1
KEGG: sli:Slin_2828 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770263.
  
     0.578
AEE48604.1
Hypothetical protein; SPTR: Putative ubiquinol--Cytochrome c reductase, cytochrome B; IMG reference gene:2504770054.
       0.561
AEE48325.1
KEGG: sli:Slin_2828 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504769769.
  
     0.497
AEE48606.1
COGs: COG0531 Amino acid transporter; InterPro IPR004841; KEGG: cpi:Cpin_1651 amino acid permease-associated region; PFAM: Amino acid permease-associated region; SPTR: Amino acid permease-associated region; IMG reference gene:2504770056; PFAM: Amino acid permease.
       0.426
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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