Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AEE48644.1KEGG: abu:Abu_0110 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770094. (619 aa)    
Predicted Functional Partners:
AEE48643.1
KEGG: abu:Abu_0109 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770093.
 
     0.947
AEE53862.1
InterPro IPR007497; PFAM: Protein of unknown function DUF541; SPTR: Putative uncharacterized protein; IMG reference gene:2504775441; PFAM: Protein of unknown function (DUF541).
  
     0.491
AEE48645.1
InterPro IPR012944; KEGG: sli:Slin_3419 RagB/SusD domain protein; PFAM: RagB/SusD; SPTR: RagB/SusD domain protein; IMG reference gene:2504770095; PFAM: SusD family.
       0.429
AEE53576.1
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR007197; KEGG: dba:Dbac_0795 radical SAM domain protein; PFAM: Radical SAM; SPTR: Putative cofactor modifying protein; IMG reference gene:2504775151; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain.
  
     0.418
AEE49071.1
KEGG: cpi:Cpin_5262 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770534; PFAM: Archaeal ATPase.
  
     0.411
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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