Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tnaATryptophanase; COGs: COG3033 Tryptophanase; HAMAP: Tryptophanase; InterPro IPR001597; KEGG: rmr:Rmar_1948 tryptophanase; PFAM: Aromatic amino acid beta-eliminating lyase/threonine aldolase; PRIAM: Tryptophanase; SPTR: Tryptophanase; IMG reference gene:2504770244; PFAM: Beta-eliminating lyase. (455 aa)    
Predicted Functional Partners:
AEE48112.1
COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: lby:Lbys_2637 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aminotransferase class I and II; IMG reference gene:2504769551; PFAM: Aminotransferase class I and II.
     
  0.900
AEE51058.1
COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR006311:IPR004839; KEGG: fbc:FB2170_12386 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol-phosphate aminotransferase; IMG reference gene:2504772577; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
     
 0.900
hisC
COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; HAMAP: Histidinol-phosphate aminotransferase; InterPro IPR005861:IPR004839; KEGG: phe:Phep_3193 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Histidinol phosphate aminotransferase apoenzyme; TIGRFAM: Histidinol-phosphate aminotransferase; IMG reference gene:2504772800; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransf [...]
     
 0.900
AEE52113.1
COGs: COG0076 Glutamate decarboxylase and related PLP-dependent protein; InterPro IPR002129; KEGG: pyridoxal-dependent decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; PRIAM: Aromatic-L-amino-acid decarboxylase; SPTR: Aromatic-L-amino-acid decarboxylase; IMG reference gene:2504773655; PFAM: Pyridoxal-dependent decarboxylase conserved domain.
     
  0.900
AEE52839.1
COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: dfe:Dfer_2627 aminotransferase class I and II; PFAM: Aminotransferase, class I/II; PRIAM: Histidinol-phosphate transaminase; SPTR: Aminotransferase, classes I and II; IMG reference gene:2504774407; PFAM: Aminotransferase class I and II; TIGRFAM: histidinol-phosphate aminotransferase.
     
 0.900
AEE53974.1
COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: phe:Phep_1507 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; PRIAM: Aspartate transaminase; SPTR: Aspartate aminotransferase; IMG reference gene:2504775554; PFAM: Aminotransferase class I and II.
     
  0.900
AEE48789.1
Protein of unknown function UPF0157; COGs: COG2320 conserved hypothetical protein; InterPro IPR007344; KEGG: bal:BACI_c34610 hypothetical protein; PFAM: Uncharacterised protein family UPF0157; SPTR: Putative uncharacterized protein; IMG reference gene:2504770245; PFAM: Uncharacterised protein family (UPF0157).
       0.410
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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