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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE48803.1Major facilitator superfamily MFS_1; InterPro IPR011701; KEGG: lbf:LBF_2018 ABC transporter permease; PFAM: Major facilitator superfamily MFS-1; SPTR: Putative transporter, Major Facilitator Superfamily (MFS); IMG reference gene:2504770262; PFAM: Bacterial protein of unknown function (DUF894). (451 aa)    
Predicted Functional Partners:
AEE48804.1
KEGG: sli:Slin_2828 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770263.
       0.678
AEE48805.1
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: sli:Slin_2829 TonB-dependent receptor plug; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent receptor plug; IMG reference gene:2504770264; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
       0.678
AEE48802.1
Hypothetical protein; IMG reference gene:2504770261.
       0.449
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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