STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE48854.1KEGG: cpi:Cpin_5460 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770313. (171 aa)    
Predicted Functional Partners:
AEE48855.1
SPTR: Putative uncharacterized protein; IMG reference gene:2504770314.
       0.781
AEE48856.1
KEGG: pmz:HMPREF0659_A5062 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770315.
       0.658
AEE49455.1
SPTR: Lipoprotein, putative; IMG reference gene:2504770924.
  
     0.585
AEE53603.1
KEGG: mtt:Ftrac_2258 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504775178.
  
     0.558
AEE49099.1
KEGG: mtt:Ftrac_3063 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770563.
  
     0.548
AEE48853.1
KEGG: mtt:Ftrac_1380 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504770312.
       0.545
AEE53196.1
KEGG: fbc:FB2170_17416 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504774769.
  
     0.543
AEE54345.1
KEGG: ppn:Palpr_2720 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504775938.
  
     0.540
AEE49287.1
InterPro IPR010496; KEGG: sli:Slin_5725 protein of unknown function DUF1080; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein; IMG reference gene:2504770753; PFAM: Domain of Unknown Function (DUF1080).
  
     0.515
AEE48852.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: cpi:Cpin_5462 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70; IMG reference gene:2504770311; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.506
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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