Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AEE49624.1InterPro IPR011020:IPR007782; KEGG: vitamin k-dependent gamma-carboxylase; PFAM: Vitamin K-dependent gamma-carboxylase; SMART: HTTM; SPTR: Gamma-glutamyl carboxylase-like protein; IMG reference gene:2504771096; PFAM: Vitamin K-dependent gamma-carboxylase. (444 aa)    
Predicted Functional Partners:
AEE49625.1
COGs: COG4772 Outer membrane receptor for Fe3+-dicitrate; InterPro IPR012910:IPR000531; KEGG: mtt:Ftrac_2415 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504771097; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.943
AEE49622.1
Peptidase M75, Imelysin; COGs: COG3489 periplasmic lipoprotein; InterPro IPR018976; KEGG: phe:Phep_1330 periplasmic lipoprotein; PFAM: Peptidase M75, Imelysin; SPTR: Periplasmic lipoprotein; IMG reference gene:2504771094; PFAM: Imelysin.
 
     0.865
AEE49623.1
KEGG: mtt:Ftrac_2418 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504771095.
 
     0.794
AEE53411.1
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: dfe:Dfer_3037 TonB-dependent receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent receptor; IMG reference gene:2504774985; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
     0.479
Your Current Organism:
Haliscomenobacter hydrossis
NCBI taxonomy Id: 760192
Other names: H. hydrossis DSM 1100, Haliscomenobacter hydrossis DSM 1100
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